2'-O-NMA-5-Me-C (Bz) CE Phosphoramidite
Oligonucleotide Synthesis, RNA Raw Materials & Modification
Product summary
Quick view
- Product family
- Oligonucleotide Synthesis, RNA Raw Materials & Modification
- MF
- C50H59N6O10P
- MW
- 935.0
- Purity
- >=95%
2'-O-NMA-5-Me-C (Bz) CE Phosphoramidite is a 2'-modified RNA building block on a 5-methylcytosine base: 5'-O-(4,4'-dimethoxytrityl)-N4-benzoyl-5-methylcytidine with a 2'-O-[2-(methylamino)-2-oxoethyl] group and a 3'-O-(2-cyanoethyl N,N-diisopropyl)phosphoramidite. It is identified by CAS 1025783-18-9, molecular formula C50H59N6O10P, molecular weight 935.0, PubChem CID 177788710, and InChIKey OABRWFIIVWCDDM-WBHVIXSUSA-N.
Two features combine: the base is 5-methylcytosine (a permanent 5-methyl base modification, with the exocyclic amine benzoyl-protected during synthesis), and the sugar carries the 2'-O-N-methylacetamide ("NMA") group (2'-O-CH2-C(=O)-NH-CH3), a permanent 2'-O-modification. The cited 2'-modification literature is used here as background for the 2'-position modification class, not as a standalone performance claim for this catalog item. The monomer couples through a standard 3'-phosphoramidite (3'→5' linkages), the 5'-DMT is removed each cycle, and the N4-benzoyl base-protecting group is removed during final deprotection.
Synonyms
5'-O-DMT-N4-Bz-5-methyl-2'-O-[2-(methylamino)-2-oxoethyl]cytidine 3'-CE phosphoramidite; 2'-O-(N-methylcarbamoylmethyl)-5-methylcytidine amidite
Identity and specifications
| Catalog No. | CH65084 |
| CAS No. | 1025783-18-9 |
| Molecular Formula | C50H59N6O10P |
| Molecular Weight | 935.0 |
| PubChem CID | 177788710 |
| InChIKey | OABRWFIIVWCDDM-WBHVIXSUSA-N |
| Purity | >=95% |
Storage conditions
-20 C
Technical attributes
- Monomer class
- 2'-O-NMA CE phosphoramidite
- Nucleobase
- 5-Methylcytosine
- Sugar modification
- 2'-O-(N-methylacetamide)
- Base protection
- N4-benzoyl
- Packaging
- 1 g; 5 g; Custom packaging on request
- Water content
- <=0.5%
- Physical form
- white to off-white powder
Application context
- 2'-O-N-methylacetamide (NMA) modification: a permanent 2'-O-amide substituent at the 2'-position.
- 5-methylcytosine base: the base is the 5-methyl analogue of cytosine, with the exocyclic amine benzoyl-protected during synthesis.
- 2'-modification literature context: the cited literature supports the broader 2'-position modification class; avoid rewriting it as a standalone performance claim for this catalog item.
- 3'→5' coupling monomer: the 3'-phosphoramidite couples to form 3'→5' linkages; the 5'-DMT is removed each cycle and the N4-benzoyl base-protecting group is removed during final deprotection.
Related technical resources
Oligonucleotide Modification
Sugar, base, backbone, terminal, and conjugation modifications for ASO, siRNA, guide RNA, aptamer, and research or labeling oligo projects.
Oligonucleotide Synthesis
Support for modified monomers, supports, sulfurizing reagents, cap analogs, and related oligo synthesis inputs.
Public references
- Sustainability Challenges and Opportunities in Oligonucleotide Manufacturing
Journal of Organic Chemistry, 2021
Product-family technical context
- Solid-phase supports for oligonucleotide synthesis
Current Protocols in Nucleic Acid Chemistry, 2013
Product-family technical context
- Deoxynucleoside phosphoramidites—A new class of key intermediates for deoxypolynucleotide synthesis
Tetrahedron Letters, 1981
Product-family technical context
- Synthesis of deoxyoligonucleotides on a polymer support
Journal of the American Chemical Society, 1981
Product-family technical context
- PubChem Compound 177788710
PubChem · CID 177788710
Frequently Asked Questions
What are the two modifications on this monomer?
The base is 5-methylcytosine (a 5-methyl modification of cytosine, benzoyl-protected on its exocyclic amine), and the sugar carries a 2'-O-N-methylacetamide (NMA) group — a permanent 2'-O-CH₂-C(=O)-NH-CH₃ substituent. Neither the 5-methyl nor the NMA group is a protecting group; both remain on the finished oligonucleotide.
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