Oligonucleotide Synthesis, RNA Raw Materials & Modification

(S)-GNA-T CE Phosphoramidite

Oligonucleotide Synthesis, RNA Raw Materials & Modification

Product NoCH65058CAS No168332-13-6Purity>=99% (HPLC)
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Product summary

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Product family
Oligonucleotide Synthesis, RNA Raw Materials & Modification
MF
C38H47N4O7P
MW
702.8
Purity
>=99% (HPLC)

(S)-GNA-T CE Phosphoramidite is the glycol nucleic acid (GNA) thymine building block for oligonucleotide synthesis: an (S)-propylene-glycol nucleoside bearing a thymine base, a DMT-protected hydroxyl, and a (2-cyanoethyl N,N-diisopropyl)phosphoramidite group. CH65058 is identified by CAS 168332-13-6, molecular formula C38H47N4O7P, molecular weight 702.8, PubChem CID 102511306, and InChIKey RIVAXSKTYGDAOA-NMIPJSAASA-N.

GNA is described in the cited literature as a simplified nucleic acid with an acyclic propylene glycol phosphodiester backbone, and the cited (S)-GNA literature discusses heteroduplex formation with RNA. As a phosphoramidite, the reactive phosphoramidite couples to the growing chain and the acid-labile DMT is removed each cycle. Because thymine has no exocyclic amine, no base protecting group is required.

Synonyms

(S)-GNA-T phosphoramidite; DMT-(S)-glycol-thymine CE phosphoramidite

Identity and specifications

Catalog No.CH65058
CAS No.168332-13-6
Molecular FormulaC38H47N4O7P
Molecular Weight702.8
PubChem CID102511306
InChIKeyRIVAXSKTYGDAOA-NMIPJSAASA-N
Purity>=99% (HPLC)

Storage conditions

-20 C

Technical attributes

Monomer class
(S)-GNA CE phosphoramidite
Nucleobase
Thymine
Backbone scaffold
Glycol nucleic acid
Base protection
None required
Grade
N (Normal)
Packaging
1 mg; 5 mg; 10 mg; 25 mg; 50 mg; 100 mg; 250 mg; 500 mg; 1 g; 5 g; 25 g; Custom packaging on request
Water content
<=0.5%
Physical form
white to off-white powder
Stability
powder 2 years

Application context

  • GNA coupling monomer: the (2-cyanoethyl N,N-diisopropyl)phosphoramidite is the reactive group that couples to the growing GNA chain in solid-phase synthesis.
  • Acyclic glycol backbone: GNA replaces the sugar-phosphate backbone with an acyclic propylene glycol phosphodiester backbone; the cited (S)-GNA literature discusses heteroduplex formation with RNA.
  • No base protection needed: thymine has no exocyclic amine, so this monomer requires no base protecting group (only the acid-labile DMT, removed each cycle).

Related technical resources

Public references

Frequently Asked Questions

Why does the GNA-T amidite have no base protecting group?

Thymine has no reactive exocyclic amine, so it needs no base protection. The monomer carries only the acid-labile DMT group (removed each cycle) and the reactive phosphoramidite coupling group.

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