CHEMOS
Oligonucleotide Synthesis, RNA Raw Materials & Modification

2'-O-Propargyl-A (Bz) CE Phosphoramidite

Oligonucleotide Synthesis, RNA Raw Materials & Modification

N.º de productoCH65073N.º CAS171486-59-2Pureza>=98%
Imagen del producto no disponible

Resumen del producto

Vista rápida

Familia de productos
Oligonucleotide Synthesis, RNA Raw Materials & Modification
FM
C50H54N7O8P
PM
912.0
Pureza
>=98%

2'-O-Propargyl-A (Bz) CE Phosphoramidite is a click-handle RNA building block: 5'-O-(4,4'-dimethoxytrityl)-N6-benzoyl-2'-O-(prop-2-yn-1-yl)adenosine 3'-O-(2-cyanoethyl N,N-diisopropyl)phosphoramidite. It is identified by CAS 171486-59-2, molecular formula C50H54N7O8P, molecular weight 912.0, PubChem CID 102119200, and InChIKey ZNKFQCJEZKZIPC-XOMUZYEBSA-N.

The 2'-O-propargyl group is a permanent 2'-O-ether that carries a terminal alkyne (C≡CH) — it is not a protecting group. That terminal alkyne is a "click" handle: oligonucleotides bearing a terminal alkyne can be labeled after synthesis by the copper-catalyzed azide-alkyne cycloaddition (CuAAC) with azide-bearing reporters. The monomer couples through a standard 3'-phosphoramidite (3'→5' linkages), the 5'-DMT is removed each cycle, and the N6-benzoyl base group is removed at final deprotection.

Sinónimos

5'-O-DMT-N6-Bz-2'-O-propargyladenosine 3'-CE phosphoramidite; 2'-O-(2-propynyl)-adenosine amidite

Identidad y especificaciones

Catalog No.CH65073
CAS No.171486-59-2
Molecular FormulaC50H54N7O8P
Molecular Weight912.0
PubChem CID102119200
InChIKeyZNKFQCJEZKZIPC-XOMUZYEBSA-N
Purity>=98%

Condiciones de almacenamiento

-20 C

Atributos técnicos

Monomer class
2'-O-propargyl CE phosphoramidite
Nucleobase
Adenine
Conjugation handle
Terminal alkyne
Base protection
N6-benzoyl
Packaging
5 mg; 10 mg; 25 mg; 50 mg; 100 mg; 200 mg; 250 mg; 500 mg; 1 g; 2 g; 5 g; 10 g; 100 g; Custom packaging on request
Water content
<=0.5%
Physical form
white to off-white powder
Stability
>=4 years

Contexto de aplicación

  • Internal click handle: the 2'-O-propargyl ether places a terminal alkyne at the 2'-position for post-synthetic conjugation.
  • CuAAC labeling: the terminal alkyne reacts with azide-bearing reporters (dyes, biotin, other tags) by the copper-catalyzed azide-alkyne cycloaddition (click chemistry).
  • 3'→5' coupling monomer: the 3'-phosphoramidite couples to form 3'→5' linkages; the 5'-DMT is removed each cycle and the N6-benzoyl base-protecting group is removed during final deprotection.

Recursos técnicos relacionados

Fuentes públicas

Preguntas frecuentes

What does the 2'-O-propargyl group provide?

It is a permanent 2'-O-ether that carries a terminal alkyne. The alkyne is a 'click' handle: after synthesis, the oligonucleotide can be conjugated to azide-bearing reporters (dyes, biotin, etc.) by the copper-catalyzed azide-alkyne cycloaddition (CuAAC).

Is the propargyl group a protecting group that gets removed?

No. Unlike the 5'-DMT (removed each cycle) or the N6-benzoyl base group (removed at final deprotection), the 2'-O-propargyl ether is a permanent modification that stays on the finished oligonucleotide as the click handle.

Productos similares

¿Necesita ayuda para seleccionar materiales?

CHEMOS puede revisar adecuación del producto, estructura objetivo, preguntas de ruta, expectativas analíticas y necesidades de suministro del proyecto.

Ver soporte de proyecto