2'-O-Propargyl-U CE Phosphoramidite
Oligonucleotide Synthesis, RNA Raw Materials & Modification
제품 개요
빠른 보기
- 제품군
- Oligonucleotide Synthesis, RNA Raw Materials & Modification
- 분자식
- C42H49N4O9P
- 분자량
- 784.8
- 순도
- 99.98%
2'-O-Propargyl-U CE Phosphoramidite is a click-handle RNA building block: 5'-O-(4,4'-dimethoxytrityl)-2'-O-(prop-2-yn-1-yl)uridine 3'-O-(2-cyanoethyl N,N-diisopropyl)phosphoramidite. It is identified by CAS 171486-62-7, molecular formula C42H49N4O9P, molecular weight 784.8, PubChem CID 102390146, and InChIKey SKUHDLBLPLSZJC-CYSIDSPMSA-N.
The 2'-O-propargyl group is a permanent 2'-O-ether that carries a terminal alkyne (C≡CH) — it is not a protecting group. That terminal alkyne is a "click" handle: oligonucleotides bearing a terminal alkyne can be labeled after synthesis by the copper-catalyzed azide-alkyne cycloaddition (CuAAC) with azide-bearing reporters. Uracil has no exocyclic amine, so no base protecting group is needed; the monomer couples through a standard 3'-phosphoramidite (3'→5' linkages) and the 5'-DMT is removed each cycle.
동의어
5'-O-DMT-2'-O-propargyluridine 3'-CE phosphoramidite; 2'-O-(2-propynyl)-uridine amidite
식별 정보 및 규격
| Catalog No. | CH65076 |
| CAS No. | 171486-62-7 |
| Molecular Formula | C42H49N4O9P |
| Molecular Weight | 784.8 |
| PubChem CID | 102390146 |
| InChIKey | SKUHDLBLPLSZJC-CYSIDSPMSA-N |
| Purity | 99.98% |
보관 조건
-20 C
기술 속성
- Monomer class
- 2'-O-propargyl CE phosphoramidite
- Nucleobase
- Uracil
- Conjugation handle
- Terminal alkyne
- Base protection
- None required
- Packaging
- 10 mg; 50 mg; 100 mg; 250 mg; 500 mg; 1 g; 5 g; 10 g; 100 g; 1 kg; Custom packaging on request
- Physical form
- solid
- Stability
- powder 3 years; in solvent 1 year
응용 맥락
- Internal click handle: the 2'-O-propargyl ether places a terminal alkyne at the 2'-position for post-synthetic conjugation.
- CuAAC labeling: the terminal alkyne reacts with azide-bearing reporters (dyes, biotin, other tags) by the copper-catalyzed azide-alkyne cycloaddition (click chemistry).
- 3'→5' coupling monomer: the 3'-phosphoramidite couples to form 3'→5' linkages and the 5'-DMT is removed each cycle. Uracil needs no base protecting group.
관련 기술 자료
공개 출처
- Sustainability Challenges and Opportunities in Oligonucleotide Manufacturing
Journal of Organic Chemistry, 2021
Product-family technical context
- Solid-phase supports for oligonucleotide synthesis
Current Protocols in Nucleic Acid Chemistry, 2013
Product-family technical context
- Deoxynucleoside phosphoramidites—A new class of key intermediates for deoxypolynucleotide synthesis
Tetrahedron Letters, 1981
Product-family technical context
- Synthesis of deoxyoligonucleotides on a polymer support
Journal of the American Chemical Society, 1981
Product-family technical context
- PubChem 화합물 102390146
PubChem · CID 102390146
자주 묻는 질문
What does the 2'-O-propargyl group provide?
It is a permanent 2'-O-ether that carries a terminal alkyne. The alkyne is a 'click' handle: after synthesis, the oligonucleotide can be conjugated to azide-bearing reporters (dyes, biotin, etc.) by the copper-catalyzed azide-alkyne cycloaddition (CuAAC).
Does the 2'-O-propargyl-U amidite need a base protecting group?
No. Uracil has no reactive exocyclic amine, so it needs no base protection. The monomer carries a 5'-O-DMT group (removed each cycle) and a 3'-phosphoramidite coupling group; the 2'-O-propargyl ether stays on the finished oligonucleotide as the click handle.
유사 제품
2'-O-Propargyl-A (Bz) CE Phosphoramidite
- CAS 번호
- 171486-59-2
- 분자식
- C50H54N7O8P
- 분자량
- 912.0
2'-O-Propargyl-C (Ac) CE Phosphoramidite
- CAS 번호
- 1498305-51-3
- 분자식
- C44H52N5O9P
- 분자량
- 825.9
2'-O-Propargyl-G (iBu) CE Phosphoramidite
- CAS 번호
- 171486-61-6
- 분자식
- C47H56N7O9P
- 분자량
- 894.0
2'-O-Propargyl-2-amino-adenosine
- CAS 번호
- 1451256-04-4
- 분자식
- C13H16N6O4
- 분자량
- 320.30
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