Oligonucleotide Synthesis, RNA Raw Materials & Modification

2'-O-NMA-5-Me-C (Bz) CE Phosphoramidite

Oligonucleotide Synthesis, RNA Raw Materials & Modification

제품 번호CH65084CAS 번호1025783-18-9순도>=95%
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제품 개요

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제품군
Oligonucleotide Synthesis, RNA Raw Materials & Modification
분자식
C50H59N6O10P
분자량
935.0
순도
>=95%

2'-O-NMA-5-Me-C (Bz) CE Phosphoramidite is a 2'-modified RNA building block on a 5-methylcytosine base: 5'-O-(4,4'-dimethoxytrityl)-N4-benzoyl-5-methylcytidine with a 2'-O-[2-(methylamino)-2-oxoethyl] group and a 3'-O-(2-cyanoethyl N,N-diisopropyl)phosphoramidite. It is identified by CAS 1025783-18-9, molecular formula C50H59N6O10P, molecular weight 935.0, PubChem CID 177788710, and InChIKey OABRWFIIVWCDDM-WBHVIXSUSA-N.

Two features combine: the base is 5-methylcytosine (a permanent 5-methyl base modification, with the exocyclic amine benzoyl-protected during synthesis), and the sugar carries the 2'-O-N-methylacetamide ("NMA") group (2'-O-CH2-C(=O)-NH-CH3), a permanent 2'-O-modification. The cited 2'-modification literature is used here as background for the 2'-position modification class, not as a standalone performance claim for this catalog item. The monomer couples through a standard 3'-phosphoramidite (3'→5' linkages), the 5'-DMT is removed each cycle, and the N4-benzoyl base-protecting group is removed during final deprotection.

동의어

5'-O-DMT-N4-Bz-5-methyl-2'-O-[2-(methylamino)-2-oxoethyl]cytidine 3'-CE phosphoramidite; 2'-O-(N-methylcarbamoylmethyl)-5-methylcytidine amidite

식별 정보 및 규격

Catalog No.CH65084
CAS No.1025783-18-9
Molecular FormulaC50H59N6O10P
Molecular Weight935.0
PubChem CID177788710
InChIKeyOABRWFIIVWCDDM-WBHVIXSUSA-N
Purity>=95%

보관 조건

-20 C

기술 속성

Monomer class
2'-O-NMA CE phosphoramidite
Nucleobase
5-Methylcytosine
Sugar modification
2'-O-(N-methylacetamide)
Base protection
N4-benzoyl
Packaging
1 g; 5 g; Custom packaging on request
Water content
<=0.5%
Physical form
white to off-white powder

응용 맥락

  • 2'-O-N-methylacetamide (NMA) modification: a permanent 2'-O-amide substituent at the 2'-position.
  • 5-methylcytosine base: the base is the 5-methyl analogue of cytosine, with the exocyclic amine benzoyl-protected during synthesis.
  • 2'-modification literature context: the cited literature supports the broader 2'-position modification class; avoid rewriting it as a standalone performance claim for this catalog item.
  • 3'→5' coupling monomer: the 3'-phosphoramidite couples to form 3'→5' linkages; the 5'-DMT is removed each cycle and the N4-benzoyl base-protecting group is removed during final deprotection.

관련 기술 자료

공개 출처

자주 묻는 질문

What are the two modifications on this monomer?

The base is 5-methylcytosine (a 5-methyl modification of cytosine, benzoyl-protected on its exocyclic amine), and the sugar carries a 2'-O-N-methylacetamide (NMA) group — a permanent 2'-O-CH₂-C(=O)-NH-CH₃ substituent. Neither the 5-methyl nor the NMA group is a protecting group; both remain on the finished oligonucleotide.

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